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ThesisBuchbinder, Margot ValerieWith the predicted acceleration of sea level rise in the mid-21st century, salt marsh restoration efforts are faced with the challenge of building and maintaining sufficient sediment to elevations that support vegetation. The highly subsided Sears Poi . . .
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ThesisRichardson, NainoaIn Schizosaccharomyces pombe, Cdc24 is required for the completion of S-phase. Many studies implicate Cdc24 in lagging strand DNA replication and in DNA repair. Interestingly, the DNA replication checkpoint kinase, Cdsl (hChk2), and the kinase-dead al . . .
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ThesisShay, Jacqueline ElizabethPrior to this monographic treatment, limited research on the genus Marasmius (Basidiomycota, Agaricales) had been conducted in Madagascar. Based on field work in January 2013 and January-February 2014, which generated 45 specimens of Marasmius sensu s . . .
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ThesisSubstratum geology is fundamental in shaping rocky shore morphology. Specific lithologies have various responses to wave action, tectonic features (e.g. fractures, faults) and sedimentary structures (e.g. bedding), creating distinctive multi-scale wea . . .
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ThesisClancy, Darragh LillianA two-part study was carried out examining population genetics and fusion behavior of an invasive colonial ascidian, Didemnum vexillum. A barcoding mitochondrial gene, COI, was used in previous studies at global and regional levels to assess the nativ . . .
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ThesisGonzalez, Julie AnneThere is an atypical distribution of the non-native crab Carcinus maenas, rarely found at high elevations in the intertidal zone elsewhere but mainly located in high elevation habitats in San Francisco Bay. Perceived threat from subtidal predators at . . .
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ThesisDuffy, Laura MargaretThis research takes an innovative approach to modeling distribution of a marine predator explicitly in the temporal domain. Harbor porpoise (Phocoena phocoena) are a small cetacean seen in San Francisco Bay year round. Porpoise presence at the entranc . . .
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ThesisMancera, Jeffrey PascualThe Astronieae represent one of the earliest diverging clades of the pantropical family Melastomataceae and are endemic to the rainforests of southeast Asia and the Pacific islands. They comprise about 150 species of trees and shrubs in four currently . . .
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ThesisWingert, Charles JohannA northern California strain of Pseudo-nitzschia australis was examined using nonaxenic, batch cultures to examine the effects of more acidic conditions (reduced pH due to increased pCO2) on the growth, photosynthesis, and domoic acid production of th . . .
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ThesisMarkello, Kelly McNealSea urchins (Echinoidea) comprise a group exhibiting enormous diversity in shape and size. At the lowest end of the size scale is Echinocyamus, a poorly known genus of highly miniaturized relatives of the sand dollars sometimes called “sea peas.” Ther . . .
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ThesisHartnett, Ryan JasonPelagic ecosystem links are typically studied separately with predator response often invoked from climate change, while intermediary alteration in nutrients and plankton production are inferred as the root cause. More specifically, we explored how Pa . . .
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ThesisRezaeihaghighi, YashaThe alphaproteobacterium Sinorhizobium meliloti colonizes the roots of host plants, such as Medicago species, and induces the formation of nodules, where it fixes molecular nitrogen in exchange for carbon compounds. A previous suppressor analysis had . . .
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ThesisFaye, Lindsay ElizabethPhyllaplysia taylori, a sea hare found in eelgrass beds along the Pacific coast, is an integral part of eelgrass ecosystems. Temperatures and salinities in San Francisco Bay are highly variable and expected to shift with continued climate change. Phyl . . .
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ThesisHood, Kelly MaeThe purpose of this investigation was to assess the day-to-day and week-to-week reliability of body fat (BF%) measurements using three different methods [air displacement plethysmography (Bod Pod), bioelectrical impedance analysis (Fitbit Aria®), and . . .
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ThesisTooley, Aaron SethNitrogen is an essential nutrient that is inaccessible to many organisms in its abundant atmospheric form. Rhizobia, a group of bacteria capable of fixing molecular dinitrogen into more useful forms, symbiotically colonize the root nodules of legumino . . .
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ThesisKim, RichardIntroduced species often disrupt established food webs, but some native predators can come to rely on introduced prey. Understanding the net effects of the non-natives on imperiled predators is crucial for planning conservation measures. The invasive . . .
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ThesisHulett, Ryan EdwardThe family Tritoniidae (Nudibranchia, Cladobranchia, Dendronotidae) is a cryptic group of nudibranchs known to feed on a variety of octocorals (Mcdonald and Nybakken, 1999). The family has a muddled evolutionary history and previously has had limited . . .
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ThesisHolmes, Ann ElisabethSelective feeding by copepods has important ecological implications such as food web length, nutrient limitation, and control of algal blooms. Traditional methods for investigating copepod feeding in natural waters (e.g. stable isotope and fatty acid . . .
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ThesisKowalski, Beatriz AngelaSalmonella, consisting of more than 2000 serovars, is the second most common cause of foodborne illness in the US that can survival intracellularly and lead to gastrointestinal illness. Phosphorothioation (PT) is a post-replicative modification that r . . .
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ThesisHarwood, Dashiell BlairThe geographical history of the Gulf of Guinea Islands has played a significant role in shaping the diversity and distributional patterns of the Hemidactylus geckos in the African- Atlantic clade. This study elucidates the phylogenetic relationships b . . .
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